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Sample GSM109819 Query DataSets for GSM109819
Status Public on May 24, 2006
Title endometrium 642
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Ambiguous histology reading
Age: 48 Diagnostics: Atrophic/no hormone/leiomyomata (SCH) Caucasian OCP/atrophicb
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 990.2957 0.9445639
1053_at 94.86207 0.9543773
117_at 68.60785 0.9993048
121_at 1537.7794 0.44821683
1255_g_at 13.581002 0.9104543
1294_at 169.42026 0.9117678
1316_at 104.44192 0.61088985
1320_at 50.14436 0.8907349
1405_i_at 102.962524 0.38674006
1431_at 21.341442 0.9703136
1438_at 180.0438 0.41067022
1487_at 126.46473 0.4677189
1494_f_at 92.3818 0.6856494
1598_g_at 1052.4054 0.8430828
160020_at 619.17957 0.83441466
1729_at 227.45467 0.67522615
1773_at 63.843395 0.90470856
177_at 38.745674 0.7890833
179_at 483.45016 0.88380307
1861_at 95.64995 0.83969

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109819_642.CEL.gz 8.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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