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Sample GSM109820 Query DataSets for GSM109820
Status Public on May 24, 2006
Title endometrium 629
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Early secretory phase ESE
Age: 46 Diagnostics: Leiomyomata (SCH) Caucasian Celexa
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 834.9559 0.53311735
1053_at 81.45531 0.5684534
117_at 54.960995 0.493063
121_at 1845.4734 0.47052702
1255_g_at 13.105737 0.80505943
1294_at 195.80684 0.5447356
1316_at 87.99887 0.96279895
1320_at 51.014713 0.9607006
1405_i_at 70.39597 0.6829772
1431_at 21.761919 0.81691897
1438_at 231.96812 0.11914083
1487_at 183.50574 0.9805751
1494_f_at 106.51815 0.9640684
1598_g_at 810.34814 0.51549685
160020_at 409.31787 0.37916532
1729_at 242.07124 0.7368663
1773_at 60.082256 0.96206725
177_at 30.699747 0.59294826
179_at 556.58093 0.5905494
1861_at 102.423 0.92715454

Total number of rows: 54675

Table truncated, full table size 1651 Kbytes.




Supplementary file Size Download File type/resource
GSM109820_629.CEL.gz 8.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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