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Sample GSM109822 Query DataSets for GSM109822
Status Public on May 24, 2006
Title endometrium 664
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Early secretory phase ESE
Age: 44 Diagnostics: TVH for uterine prolapse; adenomyosis Other
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1017.72003 0.9871458
1053_at 85.01407 0.6941358
117_at 67.26379 0.91979015
121_at 1618.8666 0.45700893
1255_g_at 14.750026 0.8959812
1294_at 195.11789 0.72767895
1316_at 98.682014 0.7767637
1320_at 47.9846 0.7658523
1405_i_at 50.177296 0.42084107
1431_at 18.844662 0.71752644
1438_at 422.55112 0.045691498
1487_at 166.89436 0.7310178
1494_f_at 108.66473 0.99270165
1598_g_at 901.10284 0.74506855
160020_at 584.1252 0.9761265
1729_at 270.60944 0.9803367
1773_at 77.39043 0.45329657
177_at 36.237072 0.9971643
179_at 611.6625 0.52721953
1861_at 82.98629 0.58444595

Total number of rows: 54675

Table truncated, full table size 1651 Kbytes.




Supplementary file Size Download File type/resource
GSM109822_664.CEL.gz 8.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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