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Sample GSM109823 Query DataSets for GSM109823
Status Public on May 24, 2006
Title endometrium 389
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Ambiguous histology reading
Age: 41 Diagnostics: Leiomyomata (TAH) Caucasian None/uncertaina
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1003.4053 0.88870597
1053_at 128.38945 0.3676848
117_at 60.76035 0.6484403
121_at 1270.4679 0.34933004
1255_g_at 12.859464 0.7030052
1294_at 130.168 0.46284992
1316_at 82.765854 0.7082812
1320_at 53.931786 0.9959601
1405_i_at 59.046387 0.46820736
1431_at 21.94213 0.9758834
1438_at 194.12888 0.31610185
1487_at 149.71518 0.53061104
1494_f_at 91.24001 0.590497
1598_g_at 1069.0294 0.8711525
160020_at 419.17645 0.44338444
1729_at 212.4691 0.52121854
1773_at 72.06039 0.6263078
177_at 31.836836 0.6506244
179_at 458.1031 0.6839274
1861_at 90.70385 0.6522466

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109823_389.CEL.gz 8.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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