NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM109824 Query DataSets for GSM109824
Status Public on May 24, 2006
Title endometrium 610
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Mid secretory phase MSE
Age: 49 Diagnostics: Leiomyomata (LAVH no endo) Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 933.46765 0.75888705
1053_at 85.631134 0.6496659
117_at 59.84796 0.61186486
121_at 2889.1968 0.3227712
1255_g_at 14.580084 0.7870893
1294_at 127.46949 0.38162053
1316_at 82.576164 0.7323206
1320_at 51.65139 0.9944124
1405_i_at 41.346745 0.27028686
1431_at 19.735622 0.80223167
1438_at 96.8866 0.35107288
1487_at 161.88356 0.6120563
1494_f_at 102.30981 0.8739333
1598_g_at 886.4513 0.6628408
160020_at 398.88522 0.3462205
1729_at 257.65707 0.9342201
1773_at 50.667316 0.50526947
177_at 32.231762 0.68097764
179_at 445.3864 0.629819
1861_at 100.397285 0.99085397

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109824_610.CEL.gz 8.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap