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Sample GSM109826 Query DataSets for GSM109826
Status Public on May 24, 2006
Title endometrium 626
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Mid secretory phase MSE
Age: 42 Diagnostics: TVH for uterine prolapse Caucasian Allegra, advil
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1245.874 0.35113528
1053_at 87.91185 0.70595604
117_at 68.20126 0.9989741
121_at 3647.327 0.14640757
1255_g_at 12.983421 0.7429565
1294_at 168.67963 0.8744302
1316_at 86.84486 0.8750799
1320_at 52.922718 0.93646383
1405_i_at 71.20463 0.6821333
1431_at 21.963652 0.8196122
1438_at 105.9164 0.41878688
1487_at 209.55025 0.5374508
1494_f_at 118.52078 0.6021942
1598_g_at 1161.8002 0.45138592
160020_at 383.54984 0.33888608
1729_at 324.84668 0.3640418
1773_at 63.305916 0.87261146
177_at 28.108438 0.45200127
179_at 631.54474 0.33145064
1861_at 94.56914 0.75157607

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109826_626.CEL.gz 8.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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