NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM109829 Query DataSets for GSM109829
Status Public on May 24, 2006
Title endometrium M153
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Mid secretory phase MSE
Age: 34 Diagnostics: Pipelle endometrial biopsy-nml volunteer Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1318.0894 0.32353452
1053_at 91.62923 0.7555717
117_at 65.5705 0.77564794
121_at 2960.0203 0.37410158
1255_g_at 14.704362 0.9170381
1294_at 188.75221 0.80649376
1316_at 92.53019 0.991485
1320_at 52.71678 0.94289225
1405_i_at 42.109535 0.2929175
1431_at 19.769289 0.7204417
1438_at 121.5218 0.56201285
1487_at 203.1641 0.7426275
1494_f_at 109.36336 0.99018
1598_g_at 955.796 0.7924482
160020_at 695.1051 0.4869134
1729_at 299.87732 0.6419299
1773_at 59.78333 0.8179577
177_at 34.266533 0.7719951
179_at 559.11194 0.7134844
1861_at 113.052666 0.70548

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109829_M153.CEL.gz 8.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap