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Sample GSM109831 Query DataSets for GSM109831
Status Public on May 24, 2006
Title endometrium M163
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Mid secretory phase MSE
Age: 33 Diagnostics: Pipelle endometrial biopsy-nml volunteer Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1128.4042 0.6737624
1053_at 85.19302 0.6360015
117_at 71.05918 0.9234165
121_at 3521.3687 0.19990633
1255_g_at 15.713555 0.66914487
1294_at 200.77322 0.5970442
1316_at 91.26738 0.9922348
1320_at 59.89224 0.59960026
1405_i_at 45.72816 0.33303672
1431_at 23.305231 0.70566064
1438_at 128.79482 0.7166356
1487_at 227.33452 0.43648255
1494_f_at 132.07437 0.4267152
1598_g_at 1009.7563 0.9914773
160020_at 595.90625 0.97032714
1729_at 353.22122 0.31017113
1773_at 81.17547 0.321587
177_at 33.812374 0.77916616
179_at 624.4177 0.42443496
1861_at 122.68299 0.47802702

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109831_M163.CEL.gz 8.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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