|
| Status |
Public on May 24, 2006 |
| Title |
endometrium 494 |
| Sample type |
RNA |
| |
|
| Source name |
uterus
|
| Organism |
Homo sapiens |
| Characteristics |
Ambiguous histology reading
Age: 45 Diagnostics: Leiomyomata (TAH) Black Norvasc, HCTZ/MSE, uncertainb
|
| Treatment protocol |
NA
|
| Growth protocol |
NA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
|
| Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
|
| Description |
Gene expression data from normal human endometrium specimen in proliferative phase.
|
| Data processing |
The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
May 22, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Said Talbi |
| E-mail(s) |
talbis@obgyn.ucsf.edu
|
| Phone |
415-514-2846
|
| Organization name |
UCSF
|
| Street address |
500 Parnassus
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE4888 |
Molecular phenotyping of human endometrium |
|
| Relations |
| Reanalyzed by |
GSE64985 |
| Reanalyzed by |
GSE119087 |
