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Sample GSM109833 Query DataSets for GSM109833
Status Public on May 24, 2006
Title endometrium 648
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Ambiguous histology reading
Age: 45 Diagnostics: Leiomyomata (SCH) Caucasian Lexapro, ambion/MSE, LSEb
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1048.2195 0.8648802
1053_at 97.714676 0.9751939
117_at 74.83257 0.63965183
121_at 3347.8499 0.17284861
1255_g_at 13.757238 0.87049806
1294_at 208.07811 0.39237964
1316_at 92.80601 0.9020306
1320_at 51.770462 0.91711336
1405_i_at 73.030655 0.6714218
1431_at 23.632591 0.54693574
1438_at 127.5832 0.6234553
1487_at 231.91757 0.30023804
1494_f_at 118.98477 0.57742333
1598_g_at 1042.1477 0.8099752
160020_at 484.90515 0.45399576
1729_at 295.57394 0.57061666
1773_at 66.94751 0.65805405
177_at 37.984737 0.7670905
179_at 567.9798 0.5409927
1861_at 108.66467 0.74437696

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109833_648.CEL.gz 8.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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