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Sample GSM109835 Query DataSets for GSM109835
Status Public on May 24, 2006
Title endometrium 449
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Late secretory phase LSE
Age: 39 Diagnostics: Leiomyomata (LAVH) Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 636.53625 0.6958813
1053_at 66.3513 0.76461005
117_at 75.16423 0.573011
121_at 907.9451 0.5182489
1255_g_at 13.114785 0.832812
1294_at 170.6372 0.76154137
1316_at 89.94848 0.72208697
1320_at 59.24553 0.52803284
1405_i_at 193.98582 0.09023239
1431_at 19.314764 0.8637327
1438_at 144.53783 0.6673829
1487_at 202.92445 0.5756643
1494_f_at 149.45769 0.30859864
1598_g_at 510.9011 0.5927767
160020_at 673.9764 0.49940813
1729_at 189.62791 0.79931945
1773_at 43.213505 0.78251106
177_at 59.18694 0.2063389
179_at 403.34705 0.92676145
1861_at 36.1459 0.50390536

Total number of rows: 54675

Table truncated, full table size 1652 Kbytes.




Supplementary file Size Download File type/resource
GSM109835_449.CEL.gz 8.0 Mb (ftp)(http) CEL

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