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Sample GSM109836 Query DataSets for GSM109836
Status Public on May 24, 2006
Title endometrium 462
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Late secretory phase LSE
Age: 39 Diagnostics: Leiomyomata (TAH) Asian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1302.8494 0.28445297
1053_at 78.95585 0.5909059
117_at 80.53892 0.41740835
121_at 3072.8162 0.2675461
1255_g_at 13.818444 0.9299489
1294_at 165.33253 0.92950356
1316_at 92.800606 0.77102077
1320_at 55.000767 0.69949925
1405_i_at 76.653435 0.9697881
1431_at 21.326021 0.8306083
1438_at 93.28393 0.39724535
1487_at 190.43074 0.77575237
1494_f_at 108.46433 0.8267631
1598_g_at 946.14514 0.9612192
160020_at 638.0295 0.5773169
1729_at 292.2136 0.56552833
1773_at 41.80367 0.40792882
177_at 59.125473 0.12763715
179_at 435.12405 0.6810865
1861_at 53.185555 0.31893992

Total number of rows: 54675

Table truncated, full table size 1651 Kbytes.




Supplementary file Size Download File type/resource
GSM109836_462.CEL.gz 8.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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