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Sample GSM109839 Query DataSets for GSM109839
Status Public on May 24, 2006
Title endometrium 619
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Late secretory phase LSE
Age: 44 Diagnostics: Leiomyomata (TAH) Caucasian
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 1085.4097 0.75088257
1053_at 95.86812 0.99488914
117_at 351.65143 0.01564958
121_at 1836.7874 0.52998304
1255_g_at 15.013905 0.7669391
1294_at 156.87039 0.7306944
1316_at 100.464134 0.6440693
1320_at 67.862495 0.34084365
1405_i_at 51.032085 0.4020661
1431_at 20.757383 0.9753765
1438_at 139.31726 0.9945211
1487_at 212.88277 0.56413245
1494_f_at 121.22212 0.6018697
1598_g_at 491.17557 0.33362678
160020_at 1855.4097 0.035466615
1729_at 261.85477 0.9800051
1773_at 74.17916 0.46049243
177_at 58.472958 0.1589779
179_at 639.9527 0.3761602
1861_at 111.68512 0.6942384

Total number of rows: 54675

Table truncated, full table size 1650 Kbytes.




Supplementary file Size Download File type/resource
GSM109839_619.CEL.gz 8.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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