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Sample GSM109840 Query DataSets for GSM109840
Status Public on May 24, 2006
Title endometrium 407
Sample type RNA
 
Source name uterus
Organism Homo sapiens
Characteristics Ambiguous histology reading
Age: 43 Diagnostics: Leiomyomata (LAVH3TAH) Black None/secretorya
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip HG 133 Plus 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner HR3000.
Description Gene expression data from normal human endometrium specimen in proliferative phase.
Data processing The data were analyzed with Gene Chip Operating System GCOS version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 22, 2006
Last update date Aug 28, 2018
Contact name Said Talbi
E-mail(s) talbis@obgyn.ucsf.edu
Phone 415-514-2846
Organization name UCSF
Street address 500 Parnassus
City San Francisco
State/province CA
ZIP/Postal code 94143
Country USA
 
Platform ID GPL570
Series (1)
GSE4888 Molecular phenotyping of human endometrium
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix ID for HG 133 Plus 2.0 chip
VALUE GCOS-calculated Signal intensity
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
1007_s_at 867.5318 0.5949765
1053_at 102.557686 0.76367414
117_at 366.38705 0.012493842
121_at 2899.6445 0.37190664
1255_g_at 13.932523 0.9783946
1294_at 183.47057 0.8195873
1316_at 79.51973 0.64536685
1320_at 52.984783 0.9435826
1405_i_at 163.15883 0.07383486
1431_at 20.722557 0.9472944
1438_at 139.52155 0.99355215
1487_at 182.0335 0.94527894
1494_f_at 121.623886 0.55545676
1598_g_at 982.79156 0.9719676
160020_at 455.359 0.4715215
1729_at 265.81357 0.98744893
1773_at 45.25547 0.4193796
177_at 53.08575 0.1857458
179_at 392.73907 0.46476176
1861_at 112.31916 0.64715296

Total number of rows: 54675

Table truncated, full table size 1651 Kbytes.




Supplementary file Size Download File type/resource
GSM109840_407.CEL.gz 8.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file

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