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Sample GSM110238 Query DataSets for GSM110238
Status Public on May 25, 2006
Title macrophages_stimlpsic_2hours_rep2
Sample type RNA
Source name macrophages, stim. LPS+immune complexes, 2 hours
Organism Mus musculus
Characteristics Balb/c bone marrow derived macrophages
Biomaterial provider Justin Edwards
Treatment protocol BMM were IFN gamma primed overnight with 100 U/ml, washed with PBS, then stimulated for 2 hours with LPS (10 ng/ml) +Immune complexes.
Growth protocol Bone marrow derived macrophages with grown from bone marrow precursers in D10 supplemented with 20% L-cell conditioned media (LCM) for 7 days. Prior to stimulation cells were plated out and grown in LCM free media overnight.
Extracted molecule total RNA
Extraction protocol Trizol extraction followed by DNase treatment and RNA cleanup using the RNeasy kit.
Label Biotin/Streptavidin Phycoerythrin (SAPE)
Label protocol Followed Affymetrix published Eukaryotic Sample and Array Processing manual.
Hybridization protocol Followed Affymetrix published Eukaryotic Sample and Array Processing manual.
Scan protocol Followed Affymetrix published Eukaryotic Sample and Array Processing manual.
Description Protocols and data processing were done using standard methods described by Affymetrix provided litterature. This includes Eukaryotic Sample and Array Processing manual and GeneChip Expression Analysis Data Analysis Fundamentals manual.
Data processing Data processing using Affymetrix Microarray Suite Version 5.0. following GeneChip Expression Analysis Data Analysis Fundamentals manual.
Submission date May 23, 2006
Last update date May 24, 2006
Contact name Justin Edwards
Organization name University of Maryland
Department CBMG
Lab Mosser
Street address Blg. 231 Room 1105
City College Park
State/province MD
ZIP/Postal code 20742
Country USA
Platform ID GPL1261
Series (1)
GSE4811 Comparison between classically activated and type II activated macrophages to identify novel markers

Data table header descriptions
VALUE MAS5.0-calculated signal intensities
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 546.9 P 0.00039
AFFX-BioB-M_at 714.6 P 0.000044
AFFX-BioB-3_at 436.3 P 0.000044
AFFX-BioC-5_at 1763 P 0.00006
AFFX-BioC-3_at 2273.1 P 0.000044
AFFX-BioDn-5_at 3279.9 P 0.000044
AFFX-BioDn-3_at 7904.1 P 0.000052
AFFX-CreX-5_at 16933.5 P 0.000052
AFFX-CreX-3_at 23395.6 P 0.000044
AFFX-DapX-5_at 657 P 0.000044
AFFX-DapX-M_at 1700.4 P 0.000225
AFFX-DapX-3_at 3108.9 P 0.000052
AFFX-LysX-5_at 96.4 P 0.000052
AFFX-LysX-M_at 313 P 0.002275
AFFX-LysX-3_at 513.3 P 0.000052
AFFX-PheX-5_at 118.1 P 0.000169
AFFX-PheX-M_at 201.1 P 0.001102
AFFX-PheX-3_at 355.9 P 0.00007
AFFX-ThrX-5_at 137.7 P 0.002556
AFFX-ThrX-M_at 297.2 P 0.000081

Total number of rows: 45101

Table truncated, full table size 1207 Kbytes.

Supplementary data files not provided

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