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Sample GSM1102616 Query DataSets for GSM1102616
Status Public on May 04, 2014
Title DM2 C
Sample type RNA
 
Source name Vastus lateralis
Organism Homo sapiens
Characteristics biopsy: DM2 vastus lateralis
age at biopsy: 34
Sex: F
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description sample C
80244
Data processing The data was normalised to the median of all samples using quantile normalisation with Inforsense KDE version 2.0.4. Probes were filtered using a unpaired t-test (p=>0.05) using GeneSpring GX version 11.0
 
Submission date Mar 20, 2013
Last update date May 04, 2014
Contact name Mark Andrew Screen
E-mail(s) mark.screen@helsinki.fi
Organization name Folkhälsan Institute of Genetics, University of Helsinki
Department Dpt. of Medical Genetics
Lab Neuromuscular disorders
Street address Biomedicum1, Haartmaninkatu 8
City Helsinki
ZIP/Postal code FI-00290
Country Finland
 
Platform ID GPL6102
Series (1)
GSE45331 Expression array analysis of myotonic dystrophy type 2 (DM2) muscle biopsies versus controls

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 0.023483276
ILMN_1660305 -0.053761005
ILMN_1792173 0.042975426
ILMN_1762337 -0.037041664
ILMN_1736007 -0.12414312
ILMN_1787689 0.036660194
ILMN_1731507 -0.385993
ILMN_1814316 -0.12469864
ILMN_1745607 0
ILMN_1757454 -0.042314053
ILMN_1668111 -0.028105736
ILMN_1735045 0.005067825
ILMN_1680754 0.033042908
ILMN_1659452 -0.19708586
ILMN_1767388 0.03244257
ILMN_1673870 -0.0270648
ILMN_1675204 -0.07029772
ILMN_1755321 0.16404104
ILMN_1698554 -0.017638206
ILMN_1814092 -0.13002586

Total number of rows: 48701

Table truncated, full table size 1182 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
Raw data are available on Series record

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