NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1102621 Query DataSets for GSM1102621
Status Public on May 04, 2014
Title control B
Sample type RNA
 
Source name Vastus lateralis
Organism Homo sapiens
Characteristics biopsy: vastus lateralis control
age at biopsy: 45
Sex: M
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description control B
Control PLE 1
Data processing The data was normalised to the median of all samples using quantile normalisation with Inforsense KDE version 2.0.4. Probes were filtered using a unpaired t-test (p=>0.05) using GeneSpring GX version 11.0
 
Submission date Mar 20, 2013
Last update date May 04, 2014
Contact name Mark Andrew Screen
E-mail(s) mark.screen@helsinki.fi
Organization name Folkhälsan Institute of Genetics, University of Helsinki
Department Dpt. of Medical Genetics
Lab Neuromuscular disorders
Street address Biomedicum1, Haartmaninkatu 8
City Helsinki
ZIP/Postal code FI-00290
Country Finland
 
Platform ID GPL6102
Series (1)
GSE45331 Expression array analysis of myotonic dystrophy type 2 (DM2) muscle biopsies versus controls

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 -0.07989645
ILMN_1660305 -0.12878084
ILMN_1792173 0.46435738
ILMN_1762337 -0.033304214
ILMN_1736007 0.08322525
ILMN_1787689 -0.03379631
ILMN_1731507 0.26412678
ILMN_1814316 -0.072092056
ILMN_1745607 0
ILMN_1757454 -0.002585411
ILMN_1668111 0.09472847
ILMN_1735045 -0.63288736
ILMN_1680754 0.08653593
ILMN_1659452 0.14056301
ILMN_1767388 0.00904274
ILMN_1673870 -0.10760975
ILMN_1675204 0.016573906
ILMN_1755321 -0.15482235
ILMN_1698554 0.00191164
ILMN_1814092 0.06738329

Total number of rows: 48701

Table truncated, full table size 1181 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
Raw data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap