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Sample GSM1102622 Query DataSets for GSM1102622
Status Public on May 04, 2014
Title control C
Sample type RNA
 
Source name Vastus lateralis
Organism Homo sapiens
Characteristics biopsy: vastus lateralis control
age at biopsy: 50
Sex: M
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description control C
Control EVI 1
Data processing The data was normalised to the median of all samples using quantile normalisation with Inforsense KDE version 2.0.4. Probes were filtered using a unpaired t-test (p=>0.05) using GeneSpring GX version 11.0
 
Submission date Mar 20, 2013
Last update date May 04, 2014
Contact name Mark Andrew Screen
E-mail(s) mark.screen@helsinki.fi
Organization name Folkhälsan Institute of Genetics, University of Helsinki
Department Dpt. of Medical Genetics
Lab Neuromuscular disorders
Street address Biomedicum1, Haartmaninkatu 8
City Helsinki
ZIP/Postal code FI-00290
Country Finland
 
Platform ID GPL6102
Series (1)
GSE45331 Expression array analysis of myotonic dystrophy type 2 (DM2) muscle biopsies versus controls

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_1809034 0.07326937
ILMN_1660305 0.09407663
ILMN_1792173 0.19425869
ILMN_1762337 -0.06811714
ILMN_1736007 -0.016994476
ILMN_1787689 0.054724693
ILMN_1731507 -0.20695257
ILMN_1814316 -0.14919662
ILMN_1745607 -0.25868034
ILMN_1757454 -0.095164776
ILMN_1668111 0.25217056
ILMN_1735045 -0.001922607
ILMN_1680754 -0.08319712
ILMN_1659452 -0.096364975
ILMN_1767388 -0.02521801
ILMN_1673870 0.12795877
ILMN_1675204 -0.05093336
ILMN_1755321 -0.029205322
ILMN_1698554 -0.089594364
ILMN_1814092 0.10686064

Total number of rows: 48701

Table truncated, full table size 1181 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
Raw data are available on Series record

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