NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM11032 Query DataSets for GSM11032
Status Public on Oct 09, 2003
Title CVB3_S-1h
Sample type RNA
 
Source name HeLa cell lysate
Organism Homo sapiens
Extracted molecule total RNA
 
Description Human cervical carcinoma cells (HeLa cells; American-Type Culture
Collection) were cultured in a 10 cm tissue culture plate. Cells were serum starved overnight and infected with phosphate buffered saline for 45 min under serum-free conditions. Following infection, virus was removed and fresh media containing 10% fetal bovine serum was added for the remainder of the infectious process. At 1 hour following infection, cells were scraped into 1ml ice cold PBS and spun at 1000 rpm for 10 minutes. Supernatant was removed and cells lysates were flash frozen in liquid nitrogen. Subsequently, RNA was isolated, processed and hybridized to Affymetrix U95A arrays.
 
Submission date Oct 08, 2003
Last update date Mar 16, 2009
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL8300
Series (1)
GSE712 CVB3-infected HeLa cells (multiple time points)

Data table header descriptions
ID_REF
VALUE Raw signal intensity values from Affymetrix MAS 5.0
ABS_CALL Present/Absent/Marginal call as determined in MAS 5.0
DETECTION-p-VALUE p-value that indicates the detection confidence as calculated by the MAS 5.0 software

Data table
ID_REF VALUE ABS_CALL DETECTION-p-VALUE
31307_at 9.1 A 0.960635
31308_at 53.8 A 0.397994
31309_r_at 20.6 A 0.892699
31310_at 18 A 0.975289
31311_at 30.3 A 0.986908
31312_at 85.4 A 0.901946
31313_at 84 A 0.47938
31314_at 48.6 A 0.697453
31315_at 241.8 A 0.47938
31316_at 15.7 A 0.939581
31317_r_at 420.3 A 0.302547
31318_at 32.2 A 0.901946
31319_at 125 A 0.697453
31320_at 611.3 A 0.397994
31321_at 259.2 A 0.138765
31322_at 18.7 A 0.951005
31323_r_at 89.9 A 0.964837
31324_at 224.9 A 0.32083
31325_at 82.8 A 0.94553
31326_at 95.6 A 0.795978

Total number of rows: 12558

Table truncated, full table size 316 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap