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Sample GSM110378 Query DataSets for GSM110378
Status Public on Jun 28, 2006
Title Barrett long-term primary cell culture
Sample type SAGE
Anchor NlaIII
Tag Count 44991
Tag Length 10
 
Source name Barrett
Organism Homo sapiens
Characteristics long-term primary cell culture
Extracted molecule total RNA
 
Description SAGE data of long-term primary cell culture derived from metaplastic Barrett's esophagus
 
Submission date May 24, 2006
Last update date Nov 19, 2008
Contact name Jantine Wilhelmina Paula Maria van Baal
E-mail(s) j.w.p.m.vanbaal-2@umcutrecht.nl
Phone +31 88 7556279
Fax +31 88 7555533
Organization name University Medical Center Utrecht
Department Gastroenterology and Hepatology
Lab Gastroenterology and Hepatology
Street address Heidelberglaan 100
City Utrecht
ZIP/Postal code 3584 CX
Country Netherlands
 
Platform ID GPL4
Series (1)
GSE5155 Barrett's esophagus

Data table header descriptions
TAG Tag
COUNT count
TPM tags per million

Data table
TAG COUNT TPM
CTTCCTTGCC 786 17470.16
TACCATCAAT 679 15091.91
GATCTCTTGG 628 13958.35
TTGGGGTTTC 590 13113.73
AAAGCACAAG 483 10735.48
GTGACCACGG 307 6823.59
GAAAAATGGT 268 5956.75
CTGGGTTAAT 261 5801.16
AGCAGATCAG 257 5712.25
TGCCCTCAGG 250 5556.67
GTGCGGAGGA 249 5534.44
GAGGGAGTTT 217 4823.19
GGATTTGGCC 216 4800.96
TACCTCTGAT 212 4712.05
CCTGGTCCCA 205 4556.47
TTCAATAAAA 204 4534.24
TAGGTTGTCT 195 4334.20
ATAATTCTTT 188 4178.61
CCCATCGTCC 176 3911.89
ATGGCTGGTA 170 3778.53

Total number of rows: 13521

Table truncated, full table size 252 Kbytes.




Supplementary data files not provided

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