GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1112038 Query DataSets for GSM1112038
Status Public on Apr 02, 2013
Title Vehicle liver rep1
Sample type RNA
Source name vehicle_liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 8 weeks
gender: male
treated with: vehicle (PBS) for a week
tissue: liver
Treatment protocol The mice were treated with vehicle or S961 (10nMol/week) using Alzet osmotic pump for a week.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol cRNA was labeled with biotin using Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scan protocol
Description replicate 1
Data processing The data were normalized by average signal on chip with Illumina BeadStudio (v.
Submission date Apr 01, 2013
Last update date Apr 02, 2013
Contact name Peng Yi
Organization name Harvard University
Department SCRB
Lab Douglas Melton Lab
Street address 7 Divinity Ave.
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
Platform ID GPL6885
Series (1)
GSE45694 Genome-wide analysis of gene expression in liver after insulin receptor antagonist S961 treatment

Data table header descriptions
VALUE BeadStudio computed normalized signal intensity.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 61.6 0.39594
ILMN_1212612 56.8 0.71447
ILMN_1212619 55.9 0.76523
ILMN_1212628 65.8 0.1802
ILMN_1212632 74.3 0.01269
ILMN_1212636 807.9 0
ILMN_1212637 1015.7 0
ILMN_1212645 3393.8 0
ILMN_1212648 144 0
ILMN_1212653 76.1 0.00127
ILMN_1212672 208.2 0
ILMN_1212682 70 0.06726
ILMN_1212683 58.2 0.62183
ILMN_1212685 62.3 0.34898
ILMN_1212692 59.3 0.54695
ILMN_1212693 104.8 0
ILMN_1212695 66.7 0.15863
ILMN_1212698 55.3 0.80711
ILMN_1212702 957 0
ILMN_1212703 102.9 0

Total number of rows: 25697

Table truncated, full table size 595 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap