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Sample GSM1112039 Query DataSets for GSM1112039
Status Public on Apr 02, 2013
Title Vehicle liver rep2
Sample type RNA
Source name vehicle_liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 8 weeks
gender: male
treated with: vehicle (PBS) for a week
tissue: liver
Treatment protocol The mice were treated with vehicle or S961 (10nMol/week) using Alzet osmotic pump for a week.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol cRNA was labeled with biotin using Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scan protocol
Description replicate 2
Data processing The data were normalized by average signal on chip with Illumina BeadStudio (v.
Submission date Apr 01, 2013
Last update date Apr 02, 2013
Contact name Peng Yi
Organization name Harvard University
Department SCRB
Lab Douglas Melton Lab
Street address 7 Divinity Ave.
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
Platform ID GPL6885
Series (1)
GSE45694 Genome-wide analysis of gene expression in liver after insulin receptor antagonist S961 treatment

Data table header descriptions
VALUE BeadStudio computed normalized signal intensity.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 61.1 0.28698
ILMN_1212612 69.5 0.03919
ILMN_1212619 51.7 0.87737
ILMN_1212628 54.5 0.73451
ILMN_1212632 82.5 0
ILMN_1212636 758.4 0
ILMN_1212637 1131.5 0
ILMN_1212645 3167.2 0
ILMN_1212648 126.6 0
ILMN_1212653 71.9 0.02149
ILMN_1212672 196.2 0
ILMN_1212682 69.2 0.04425
ILMN_1212683 61.4 0.27181
ILMN_1212685 56.8 0.58407
ILMN_1212692 60.6 0.30847
ILMN_1212693 129.7 0
ILMN_1212695 64.4 0.16182
ILMN_1212698 53.4 0.80278
ILMN_1212702 874.4 0
ILMN_1212703 122.8 0

Total number of rows: 25697

Table truncated, full table size 595 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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