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Sample GSM1112040 Query DataSets for GSM1112040
Status Public on Apr 02, 2013
Title Vehicle liver rep3
Sample type RNA
Source name vehicle_liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 8 weeks
gender: male
treated with: vehicle (PBS) for a week
tissue: liver
Treatment protocol The mice were treated with vehicle or S961 (10nMol/week) using Alzet osmotic pump for a week.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol cRNA was labeled with biotin using Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scan protocol
Description replicate 3
Data processing The data were normalized by average signal on chip with Illumina BeadStudio (v.
Submission date Apr 01, 2013
Last update date Apr 02, 2013
Contact name Peng Yi
Organization name Harvard University
Department SCRB
Lab Douglas Melton Lab
Street address 7 Divinity Ave.
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
Platform ID GPL6885
Series (1)
GSE45694 Genome-wide analysis of gene expression in liver after insulin receptor antagonist S961 treatment

Data table header descriptions
VALUE BeadStudio computed normalized signal intensity.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 67.3 0.17752
ILMN_1212612 64.7 0.29119
ILMN_1212619 58.5 0.72031
ILMN_1212628 55 0.90166
ILMN_1212632 83.7 0
ILMN_1212636 694 0
ILMN_1212637 1466.6 0
ILMN_1212645 3468.9 0
ILMN_1212648 118 0
ILMN_1212653 78.7 0
ILMN_1212672 207.1 0
ILMN_1212682 58.4 0.72669
ILMN_1212683 58.4 0.72669
ILMN_1212685 61.5 0.48148
ILMN_1212692 70.9 0.06769
ILMN_1212693 118.3 0
ILMN_1212695 70.1 0.09068
ILMN_1212698 60.5 0.57471
ILMN_1212702 2640 0
ILMN_1212703 129.5 0

Total number of rows: 25697

Table truncated, full table size 594 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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