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Sample GSM1112042 Query DataSets for GSM1112042
Status Public on Apr 02, 2013
Title S961 liver rep1
Sample type RNA
Source name S961_liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 8 weeks
gender: male
treated with: S961 (10nMol/week) for a week
tissue: liver
Treatment protocol The mice were treated with vehicle or S961 (10nMol/week) using Alzet osmotic pump for a week.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol cRNA was labeled with biotin using Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scan protocol
Description replicate 1
Data processing The data were normalized by average signal on chip with Illumina BeadStudio (v.
Submission date Apr 01, 2013
Last update date Apr 02, 2013
Contact name Peng Yi
Organization name Harvard University
Department SCRB
Lab Douglas Melton Lab
Street address 7 Divinity Ave.
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
Platform ID GPL6885
Series (1)
GSE45694 Genome-wide analysis of gene expression in liver after insulin receptor antagonist S961 treatment

Data table header descriptions
VALUE BeadStudio computed normalized signal intensity.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 61.1 0.21456
ILMN_1212612 77.7 0
ILMN_1212619 55.6 0.61686
ILMN_1212628 58.7 0.37803
ILMN_1212632 77.3 0
ILMN_1212636 910.2 0
ILMN_1212637 1610.2 0
ILMN_1212645 3739.8 0
ILMN_1212648 132.2 0
ILMN_1212653 69 0.02299
ILMN_1212672 195.8 0
ILMN_1212682 54.7 0.6871
ILMN_1212683 56 0.5811
ILMN_1212685 54.6 0.69221
ILMN_1212692 63.6 0.12516
ILMN_1212693 130.3 0
ILMN_1212695 61.7 0.18902
ILMN_1212698 55 0.66284
ILMN_1212702 7773.9 0
ILMN_1212703 130.7 0

Total number of rows: 25697

Table truncated, full table size 592 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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