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Sample GSM1112043 Query DataSets for GSM1112043
Status Public on Apr 02, 2013
Title S961 liver rep2
Sample type RNA
Source name S961_liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 8 weeks
gender: male
treated with: S961 (10nMol/week) for a week
tissue: liver
Treatment protocol The mice were treated with vehicle or S961 (10nMol/week) using Alzet osmotic pump for a week.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol cRNA was labeled with biotin using Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scan protocol
Description replicate 2
Data processing The data were normalized by average signal on chip with Illumina BeadStudio (v.
Submission date Apr 01, 2013
Last update date Apr 02, 2013
Contact name Peng Yi
Organization name Harvard University
Department SCRB
Lab Douglas Melton Lab
Street address 7 Divinity Ave.
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
Platform ID GPL6885
Series (1)
GSE45694 Genome-wide analysis of gene expression in liver after insulin receptor antagonist S961 treatment

Data table header descriptions
VALUE BeadStudio computed normalized signal intensity.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 55.8 0.55172
ILMN_1212612 79.4 0
ILMN_1212619 49.5 0.92337
ILMN_1212628 51.4 0.85441
ILMN_1212632 84.5 0
ILMN_1212636 756.2 0
ILMN_1212637 1477.5 0
ILMN_1212645 4231.5 0
ILMN_1212648 119.2 0
ILMN_1212653 64.2 0.10473
ILMN_1212672 164.1 0
ILMN_1212682 55.8 0.55045
ILMN_1212683 54.1 0.6871
ILMN_1212685 60.8 0.21839
ILMN_1212692 71.5 0.00639
ILMN_1212693 126 0
ILMN_1212695 57.5 0.41635
ILMN_1212698 51.9 0.82375
ILMN_1212702 6951.4 0
ILMN_1212703 113.5 0

Total number of rows: 25697

Table truncated, full table size 593 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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