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Sample GSM1112044 Query DataSets for GSM1112044
Status Public on Apr 02, 2013
Title S961 liver rep3
Sample type RNA
 
Source name S961_liver
Organism Mus musculus
Characteristics strain: C57BL6/J
age: 8 weeks
gender: male
treated with: S961 (10nMol/week) for a week
tissue: liver
Treatment protocol The mice were treated with vehicle or S961 (10nMol/week) using Alzet osmotic pump for a week.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol cRNA was labeled with biotin using Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scan protocol
Description replicate 3
SAMPLE 7
Data processing The data were normalized by average signal on chip with Illumina BeadStudio (v.3.1.3.0).
 
Submission date Apr 01, 2013
Last update date Apr 02, 2013
Contact name Peng Yi
E-mail(s) pyi@fas.harvard.edu
Organization name Harvard University
Department SCRB
Lab Douglas Melton Lab
Street address 7 Divinity Ave.
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
 
Platform ID GPL6885
Series (1)
GSE45694 Genome-wide analysis of gene expression in liver after insulin receptor antagonist S961 treatment

Data table header descriptions
ID_REF
VALUE BeadStudio computed normalized signal intensity.
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1212607 61 0.2612
ILMN_1212612 74.7 0
ILMN_1212619 54 0.77593
ILMN_1212628 60.3 0.29962
ILMN_1212632 86.5 0
ILMN_1212636 786 0
ILMN_1212637 1099.9 0
ILMN_1212645 3952.6 0
ILMN_1212648 117 0
ILMN_1212653 63 0.17157
ILMN_1212672 189.3 0
ILMN_1212682 60.5 0.29065
ILMN_1212683 52.2 0.86812
ILMN_1212685 49.8 0.96287
ILMN_1212692 68.4 0.03201
ILMN_1212693 118.3 0
ILMN_1212695 71.2 0.00768
ILMN_1212698 52.4 0.86172
ILMN_1212702 6958.4 0
ILMN_1212703 126.4 0

Total number of rows: 25697

Table truncated, full table size 592 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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