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Sample GSM111905 Query DataSets for GSM111905
Status Public on Jun 03, 2006
Title PCN, biological rep5a
Sample type RNA
Source name Rattus, adult liver
Organism Rattus norvegicus
Characteristics Sprague-Dawley, 150-200 g
Treatment protocol After an overnight fast, animal received a single intraperitoneal dose of PCN (100 mg/kg) and sacrificed 8 h later
Extracted molecule total RNA
Extraction protocol RNeasy kit, DNase I treatment on column, following manufacturer's instructions
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
Hybridization protocol Following fragmentation, cRNA were hybridized at 45c for 16 h using a Affymetrix GeneChip Hybridization Oven 640
Scan protocol Affymetrix GeneChip Scanner 3000
Description Gene expression data from adult rat liver; PCN (100 mg/kg); 8 h treatment
Data processing Affymetrix Microarray Analysis Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date May 31, 2006
Last update date Jun 02, 2006
Contact name Linda C Quattrochi
Phone 303-315-3522
Organization name University of Colorado at Denver and Health Sciences
Department Medicine
Lab Quattrochi
Street address 4200 E. 9th Ave, B146
City Denver
State/province CO
ZIP/Postal code 80262
Country USA
Platform ID GPL341
Series (1)
GSE4959 Expression data from adult Rattus liver

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M) or no-call (NC).
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call.

Data table
1367452_at 10.7293624270882 P 0.00167287722066533
1367453_at 11.3847137619435 P 0.00167287722066533
1367454_at 10.9777772047138 P 0.00221961024320294
1367455_at 12.1693574806009 P 0.00167287722066533
1367456_at 12.6349370612010 P 0.00167287722066533
1367457_at 10.5937380887029 P 0.00167287722066533
1367458_at 9.84681702132171 P 0.00639609278054317
1367459_at 13.1622538046826 P 0.00167287722066533
1367460_at 11.6354787905643 P 0.00167287722066533
1367461_at 11.1636407644848 P 0.00167287722066533
1367462_at 11.0349311880571 P 0.0049627730509202
1367463_at 11.4591883779631 P 0.00167287722066533
1367464_at 10.6180638101053 P 0.00167287722066533
1367465_at 11.1664596191297 P 0.00167287722066533
1367466_at 11.1275333410442 P 0.00221961024320294
1367467_at 11.7542165834401 P 0.00167287722066533
1367468_at 10.6553739192951 P 0.00221961024320294
1367469_at 11.8303564587561 P 0.00167287722066533
1367470_at 12.0006669573928 P 0.00167287722066533
1367471_at 9.83650016103393 P 0.00167287722066533

Total number of rows: 15923

Table truncated, full table size 762 Kbytes.

Supplementary data files not provided

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