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Sample GSM1120505 Query DataSets for GSM1120505
Status Public on Apr 10, 2014
Title Day 1 post PBS mock sample 3
Sample type RNA
 
Source name Day 1 post PBS mock
Organism Mus musculus
Characteristics time: 1 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 1 post PBS mock
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.6925415674336 8129.392 1337.50810476737 0 40
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.5208877648617 1821.614 291.949915611471 0 42
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.9265218559348 2496.815 411.476360866572 0 39
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3166289231748 11864.71 1613.21297486569 0 51
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.18963635695753 511.9847 136.660545640652 0 42
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.6609060106674 2031.385 337.380276064204 0 34
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.62888869834814 837.3062 207.103039733205 0 37
ILMN_2737647 QblRddpw5X.qvuqKOA 8.61056639108783 194.5823 66.2061589300807 0.2243108 39
ILMN_2734484 c30eG3GHzE0D_U4NX8 9.8684869328451 1052.16 342.978287671079 0 39
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.72367039371405 248.4275 84.3850259051687 0.04010025 60
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.52807033832292 156.3495 57.3554885198156 0.6077694 43
ILMN_1213681 odfnyvXghIeuVEvU6U 10.3138740729859 1571.526 335.686493315237 0 38
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.66487173791934 220.4052 67.1816542217412 0.09273183 29
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.72609878674995 249.5932 96.0721793525404 0.03634085 43
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.5812899797668 1914.585 427.574313183904 0 35
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.7580127426192 4431.846 653.798283795606 0 32
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.86690391592461 1051.018 283.894792405621 0 33
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.7230780919083 248.218 85.9064615110924 0.04010025 53
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.77415642111222 273.478 100.260869508641 0.02255639 48
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.68518013366854 229.9062 55.1060378770603 0.07393484 30

Total number of rows: 25697

Table truncated, full table size 2102 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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