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Sample GSM1120507 Query DataSets for GSM1120507
Status Public on Apr 10, 2014
Title Day 1 post PBS mock and linezolid treated sample 1
Sample type RNA
 
Source name Day 1 post PBS mock and linezolid treated
Organism Mus musculus
Characteristics time: 1 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 1 post PBS mock and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.5187913911026 11296.52 2701.59585915652 0 44
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.3924440142499 2539.323 720.719918111716 0 52
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.8218996313107 3555.684 748.590811558892 0 40
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3630147476642 19226.46 3153.6488611305 0 38
ILMN_2816356 3rtRBd9AcK1Qq07fGI 8.94086884331787 483.567 154.020431370319 0 23
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.6336058576386 3111.827 809.915848869881 0 38
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.83266958338871 1515.199 555.318 0 36
ILMN_2737647 QblRddpw5X.qvuqKOA 8.64480979140791 250.0961 78.1521459985738 0.1015038 24
ILMN_2734484 c30eG3GHzE0D_U4NX8 10.3586966343353 2469.114 487.300778378974 0 46
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.82442461140538 383.601 141.725046225313 0.005012531 39
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.49534576967612 155.9676 54.6949567960425 0.8032581 40
ILMN_1213681 odfnyvXghIeuVEvU6U 9.77196486246819 1422.649 415.409119319002 0 52
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.65547995445797 257.4597 96.8450555215877 0.0877193 34
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.63551574960595 243.4775 79.8677142940751 0.1140351 34
ILMN_2891688 xV44FuIB_kt4dvuCBY 11.0759189078946 4326.095 1250.44192719054 0 31
ILMN_2637698 TpTvRuNk4kt__PsCcE 12.0124410772289 8282.815 1942.29117745244 0 40
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.70469771675802 1322.907 347.80243558283 0 44
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.63703880401259 244.6228 93.6481742380993 0.1115288 46
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.75354262631597 326.0037 117.43606343314 0.01503759 21
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.66112127452002 261.4032 72.318073253648 0.0839599 32

Total number of rows: 25697

Table truncated, full table size 2095 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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