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Sample GSM1120509 Query DataSets for GSM1120509
Status Public on Apr 10, 2014
Title Day 1 post PBS mock and linezolid treated sample 3
Sample type RNA
 
Source name Day 1 post PBS mock and linezolid treated
Organism Mus musculus
Characteristics time: 1 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 1 post PBS mock and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.4984612738094 5448.608 1109.58064732943 0 50
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.5812899797668 1463.751 344.15402 0 49
ILMN_3033922 xnx7ijE2CcOSlY55eA 11.2116779128099 2333.835 505.302070642849 0 38
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3316315901546 9078.821 1623.8559802307 0 44
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.14158939482724 371.7493 154.57765502732 0 42
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.5610448478703 1445.392 370.516307346957 0 45
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.64785537133452 658.8964 197.92372076292 0 39
ILMN_2737647 QblRddpw5X.qvuqKOA 8.6068413615625 146.5812 57.8020797985816 0.2418546 31
ILMN_2734484 c30eG3GHzE0D_U4NX8 9.73095578190935 708.8571 226.089890804786 0 47
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.68456550835896 175.0285 62.3322615758237 0.07142857 48
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.49365562161984 106.1971 31.9952170153878 0.8182957 40
ILMN_1213681 odfnyvXghIeuVEvU6U 10.466075909446 1346.762 203.877649031 0 43
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.6595668229816 166.0828 62.6529950149233 0.09649123 34
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.73529353606186 194.6269 71.00208 0.03132832 36
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.4034391474044 1279.313 488.717548185175 0 37
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.7413110198404 3315.024 724.063748314801 0 48
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.92627161616577 855.9527 253.0395 0 49
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.64966602952707 162.1919 55.7586145086521 0.1215539 39
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.78324984737249 212.5919 70.7169546593149 0.01253133 31
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.73450666758883 194.3068 67.4999042151854 0.03258145 32

Total number of rows: 25697

Table truncated, full table size 2105 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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