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Sample GSM1120512 Query DataSets for GSM1120512
Status Public on Apr 10, 2014
Title Day 1 post MRSA wild type infection and linezolid treated sample 2
Sample type RNA
 
Source name Day 1 post MRSA wild type infection and linezolid treated
Organism Mus musculus
Characteristics time: 1 d
tissue: lung
strain: C57Bl6
gender: male
infection: MRSA LAC
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 1 post MRSA wild type infection and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.3353551773574 6287.181 1561.17570603973 0 46
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.1522322594124 1247.942 328.789115141494 0 43
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.767466738276 2044.323 429.536558526363 0 35
ILMN_3092673 xPkUXaq37oR_vSi6HY 12.8837248620972 9040.98 1424.14974465873 0 43
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.10133458437771 422.9449 192.954804082083 0 33
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.4774604856 1647.421 313.050904117942 0 28
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.83230889553064 943.0986 268.881886019922 0 39
ILMN_2737647 QblRddpw5X.qvuqKOA 8.60594265443682 167.662 67.2057363971819 0.1929825 27
ILMN_2734484 c30eG3GHzE0D_U4NX8 10.2910188865992 1409.994 411.877537804528 0 50
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.71777196457161 219.3131 95.9542832145496 0.02882206 45
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.46250009331823 109.3761 33.1749406570079 0.9486216 39
ILMN_1213681 odfnyvXghIeuVEvU6U 9.69093534633326 826.9203 226.051329288362 0 57
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.64304690354957 184.5069 76.0566016127713 0.1165414 38
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.6823354843455 202.734 94.8365841414082 0.05764411 34
ILMN_2891688 xV44FuIB_kt4dvuCBY 11.0208677869476 2497.936 618.230313240559 0 38
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.7535882397569 4179.516 1032.0177 0 49
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.77149411194126 892.7487 253.427327023306 0 39
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.65426598473244 190.0945 64.1419904521289 0.09774436 42
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.75647360560806 239.5949 85.9243 0.01253133 25
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.62145982533884 174.5848 52.2314313338117 0.1629073 31

Total number of rows: 25697

Table truncated, full table size 2100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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