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Sample GSM1120514 Query DataSets for GSM1120514
Status Public on Apr 10, 2014
Title Day 1 post MRSA wild type infection and linezolid treated sample 4
Sample type RNA
 
Source name Day 1 post MRSA wild type infection and linezolid treated
Organism Mus musculus
Characteristics time: 1 d
tissue: lung
strain: C57Bl6
gender: male
infection: MRSA LAC
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 1 post MRSA wild type infection and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.6028205408079 6921.393 1349.45136709275 0 57
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.507226198884 1470.549 343.946648034786 0 42
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.885679917728 1997.294 460.337599905921 0 39
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.1501262126406 9941.055 1173.93621546617 0 34
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.02437883276113 324.7039 113.972028623448 0 40
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.8994655054071 2016.77 541.374775147254 0 31
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.79948952607166 794.5151 192.705260280718 0 33
ILMN_2737647 QblRddpw5X.qvuqKOA 8.69101731334508 197.5495 83.1590888975901 0.07769424 37
ILMN_2734484 c30eG3GHzE0D_U4NX8 10.1076210941529 1047.005 369.34695 0 49
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.85005999099688 253.7061 56.7308931593738 0.005012531 41
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.49335537971453 134.0605 51.5117025875519 0.802005 43
ILMN_1213681 odfnyvXghIeuVEvU6U 10.1325820788919 1071.192 245.809680453268 0 51
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.87512366454583 262.7029 109.727551345127 0.002506266 31
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.72953666345917 211.4598 71.3738323237754 0.03884712 39
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.8430297352966 1940.394 395.130388371231 0 40
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.6539080819187 3546.689 744.822641499035 0 40
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 10.257513555008 1198.781 311.497936355123 0 54
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.64534697232395 182.7495 57.1379909315443 0.1390978 39
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.63618758066665 179.8582 55.2569377852804 0.1578947 31
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.80222462617374 236.057 89.852899658119 0.01002506 30

Total number of rows: 25697

Table truncated, full table size 2102 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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