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Sample GSM1120515 Query DataSets for GSM1120515
Status Public on Apr 10, 2014
Title Day 3 post PBS mock sample 1
Sample type RNA
 
Source name Day 3 post PBS mock
Organism Mus musculus
Characteristics time: 3 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 3 post PBS mock
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.7694715769589 10136.79 2092.44912463141 0 43
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.5607480454635 2221.726 651.545892764339 0 28
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.9558817706789 2987.208 756.552666352 0 43
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3000639646088 14490.65 2548.92476635645 0 48
ILMN_2816356 3rtRBd9AcK1Qq07fGI 8.95577804637994 398.5515 135.793008470392 0.002506266 26
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.7595931067804 2568.914 532.489289836077 0 37
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.81891117769527 1157.678 412.921137691025 0 27
ILMN_2737647 QblRddpw5X.qvuqKOA 8.61711739751934 185.9648 70.2931595630599 0.1854637 42
ILMN_2734484 c30eG3GHzE0D_U4NX8 10.3488648266454 1882.182 493.87777161943 0 35
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.70698296478166 238.5968 89.6582773507126 0.05639098 37
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.50341788640824 127.3251 47.0887621820087 0.7293233 44
ILMN_1213681 odfnyvXghIeuVEvU6U 9.88212792084806 1233.092 273.304824622152 0 42
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.6489173703092 203.8539 87.6487759212033 0.1165414 37
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.67772699071419 220.3736 86.3463647548071 0.07769424 38
ILMN_2891688 xV44FuIB_kt4dvuCBY 11.205719048607 3628.471 739.161911476721 0 32
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.7219247973202 5174.803 1224.89497010005 0 40
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.62801718014046 952.1229 306.012794295907 0 53
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.66551843868021 212.6778 99.0192889485175 0.09273183 43
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.68031115730499 222.0823 115.651330429577 0.07393484 32
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.64609348075651 202.1239 91.7779150976933 0.1203008 26

Total number of rows: 25697

Table truncated, full table size 2109 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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