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Sample GSM1120517 Query DataSets for GSM1120517
Status Public on Apr 10, 2014
Title Day 3 post PBS mock sample 3
Sample type RNA
 
Source name Day 3 post PBS mock
Organism Mus musculus
Characteristics time: 3 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 3 post PBS mock
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.8428182412576 6537.83 1353.93076167736 0 46
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.5605213874808 1331.207 332.945803746286 0 45
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.9903837842547 1869.729 352.247737642387 0 22
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3237362903187 8903.936 1448.87151323979 0 56
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.0023559948515 304.0139 78.3599 0.001253133 25
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.5983007576579 1370.866 340.270173486393 0 46
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.84993521282632 739.8852 200.58953850349 0 38
ILMN_2737647 QblRddpw5X.qvuqKOA 8.58862896862701 162.3873 39.260412158206 0.3032582 37
ILMN_2734484 c30eG3GHzE0D_U4NX8 9.69717479542337 645.9302 263.567243771333 0 46
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.71611928875157 203.6282 52.6532018135468 0.06140351 43
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.53798250410029 145.187 46.6799195853052 0.5363408 43
ILMN_1213681 odfnyvXghIeuVEvU6U 10.3615383271756 1141.221 270.579494740886 0 46
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.71155999890602 202.2744 79.5699341273273 0.06390978 32
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.87492782187762 255.8239 98.9598037552622 0.006265664 38
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.5703357095225 1342.473 302.210570889179 0 43
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.5486079558974 2755.212 711.750021638201 0 38
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.93423501374032 798.8547 228.066727058392 0 42
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.73581657764809 209.841 78.8495134741972 0.04260652 34
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.76232185291704 218.1061 78.2231526216529 0.03007519 34
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.6861867798631 194.2323 58.5661653586386 0.09022556 26

Total number of rows: 25697

Table truncated, full table size 2109 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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