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Sample GSM1120519 Query DataSets for GSM1120519
Status Public on Apr 10, 2014
Title Day 3 post PBS mock and linezolid treated sample 1
Sample type RNA
 
Source name Day 3 post PBS mock and linezolid treated
Organism Mus musculus
Characteristics time: 3 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 3 post PBS mock and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.6735757261194 10694.99 2234.6475087041 0 46
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.5969243285761 2537.712 617.338223485217 0 39
ILMN_3033922 xnx7ijE2CcOSlY55eA 11.012842206021 3478.015 687.052091821282 0 44
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3293488191602 16432.84 2964.64952400611 0 54
ILMN_2816356 3rtRBd9AcK1Qq07fGI 8.9973975218022 501.8925 185.231068020135 0 37
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.6575088028545 2673.855 610.009156284276 0 39
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.73423006218531 1206.348 519.022296904498 0 37
ILMN_2737647 QblRddpw5X.qvuqKOA 8.67110240100381 264.9153 128.90227987706 0.07894737 40
ILMN_2734484 c30eG3GHzE0D_U4NX8 10.4790973824298 2326.926 636.325482425541 0 51
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.66513087478573 261.0486 90.3805997620756 0.0839599 61
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.4917720986627 157.2694 62.2916068792685 0.820802 48
ILMN_1213681 odfnyvXghIeuVEvU6U 9.94264078308109 1475.334 371.215306517614 0 60
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.69854559390179 282.099 126.267521854525 0.05012531 30
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.68164485759072 271.8687 117.452244390349 0.0651629 38
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.9342151134543 3281.783 628.498285405458 0 35
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.7435586121695 5893.247 1512.18193939109 0 35
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.79287213640445 1274.758 438.55917 0 49
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.64713643885653 249.607 106.545720163556 0.1140351 43
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.69265848605932 278.7217 102.139196634593 0.05513784 21
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.68175792728592 271.9317 106.142466681071 0.0651629 47

Total number of rows: 25697

Table truncated, full table size 2102 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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