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Sample GSM1120521 Query DataSets for GSM1120521
Status Public on Apr 10, 2014
Title Day 3 post PBS mock and linezolid treated sample 3
Sample type RNA
 
Source name Day 3 post PBS mock and linezolid treated
Organism Mus musculus
Characteristics time: 3 d
tissue: lung
strain: C57Bl6
gender: male
infection: mock
treatment: linezolid
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Biotin
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Day 3 post PBS mock and linezolid treated
Data processing Quantile normalized using Bioconductor lumi package
 
Submission date Apr 10, 2013
Last update date Apr 10, 2014
Contact name Jiwang Chen
E-mail(s) chenjw@uic.edu
Organization name University of Illinois at Chicago
Street address 840 S Wood Street
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platform ID GPL6885
Series (1)
GSE46071 Linezolid Exerts Greater Bacterial Clearance but No Modification of Host Lung Gene Expression Profiling: a Mouse MRSA Pneumonia Model

Data table header descriptions
ID_REF
nuID nucleotide universal IDentifier (nuID), convertible to and from probe sequence. See Bioconductor lumi package for more details.
VALUE quantile normalized log2 signal
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF nuID VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2896528 WpaZ9x9f_hAnoR.VBE 12.5324438191082 4446.643 967.321306636166 0 30
ILMN_2721178 ZhdXp75JftSF3iWLF4 10.6149445949485 1156.077 306.821897740916 0 41
ILMN_3033922 xnx7ijE2CcOSlY55eA 10.9610353891475 1497.53 432.84199195617 0 46
ILMN_3092673 xPkUXaq37oR_vSi6HY 13.3259999960709 7359.609 1919.46131640946 0 34
ILMN_2816356 3rtRBd9AcK1Qq07fGI 9.08828578880081 276.7593 76.7364824247242 0 37
ILMN_2808939 ZqRKnn0K14kTIep1.c 10.9644173106551 1499.338 313.951940779429 0 38
ILMN_2634564 6eu5PPSC6SyheqOhqU 9.95443265179565 672.4745 197.986183963226 0 43
ILMN_2737647 QblRddpw5X.qvuqKOA 8.69410738606568 164.9707 54.7678069529483 0.07518797 37
ILMN_2734484 c30eG3GHzE0D_U4NX8 9.81891117769527 595.4711 155.987914942637 0 35
ILMN_2952292 Hfl_tOO3nRJfAFfAEc 8.7466152441423 178.6703 52.9158555064595 0.04010025 45
ILMN_2699078 Q8PLHgz7j98.iByDh8 8.58101697944898 134.8633 51.2533985266411 0.3245614 43
ILMN_1213681 odfnyvXghIeuVEvU6U 10.4186848647606 984.0307 328.499478543096 0 42
ILMN_2735413 W4IAU6Hr_nHOitXlmU 8.65245378377723 153.6505 50.2635042502341 0.1278196 33
ILMN_2735415 oCAFOh6.pxzorV5ZlU 8.77291309647901 185.2288 62.804883220233 0.03132832 39
ILMN_2891688 xV44FuIB_kt4dvuCBY 10.6419236228894 1184.966 284.285965907032 0 47
ILMN_2637698 TpTvRuNk4kt__PsCcE 11.4694891836437 2172.688 625.698214955733 0 39
ILMN_2674228 xOG1rtd0XUBlXUVJJ0 9.87866375456023 627.7717 154.111415161083 0 44
ILMN_2601546 TT0cEh7vqvKKURhOSk 8.61835330165404 144.724 38.2204209332022 0.2117794 38
ILMN_1230831 TCgvMriKfuiKpwdS1U 8.8848389805857 215.642 94.9000534810176 0.005012531 30
ILMN_2848071 0VS3KfYW7T6rn7p4Xw 8.75843955571399 181.4436 64.713256229095 0.03383459 29

Total number of rows: 25697

Table truncated, full table size 2110 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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