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Sample GSM1124859 Query DataSets for GSM1124859
Status Public on Oct 20, 2013
Title Insm1 control #3
Sample type RNA
 
Source name Insm1 control #3_pituitary gland
Organism Mus musculus
Characteristics strain: C57/BL6;129Ola mixed
genotype/variation: Insm1 +/-
developmental stage: embryo
age: E17.5
tissue: pituitary gland
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplif Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample name: 5003391025_f
replicate 3
Data processing The data were normalised using quantile normalisation with Illumina Genome Studio
 
Submission date Apr 17, 2013
Last update date Oct 20, 2013
Contact name Jochen Welcker
E-mail(s) jochen.welcker@gmx.de
Organization name MDC Berlin
Street address Robert-Rössle-Str. 10
City Berlin
ZIP/Postal code 13125
Country Germany
 
Platform ID GPL6885
Series (1)
GSE46139 Genome-wide analysis of E17.5 pituitary gland gene expression of control and Insm1 mutant mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal [AVG_Signal]
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 1746.556 0
ILMN_2707227 24.9066 0.02631579
ILMN_2896528 6432.646 0
ILMN_2721178 919.6431 0
ILMN_1227723 379.2233 0
ILMN_3033922 1501.144 0
ILMN_3092673 9376.498 0
ILMN_2730714 4377.61 0
ILMN_3162224 2230.344 0
ILMN_2816356 54.95527 0
ILMN_2808939 995.4037 0
ILMN_2634564 361.4153 0
ILMN_1216623 681.9062 0
ILMN_1215157 1091.032 0
ILMN_1228777 -1.883431 0.5150376
ILMN_2737647 10.79337 0.1190476
ILMN_1216425 -0.9362479 0.4674186
ILMN_2734484 1349.335 0
ILMN_2652961 -1.535109 0.4962406
ILMN_2952292 99.23389 0

Total number of rows: 25697

Table truncated, full table size 715 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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