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Sample GSM112797 Query DataSets for GSM112797
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4S_NB11
Sample type SAGE
Anchor NlaIII
Tag Count 28161
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4S
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4S
Age at diagnosis: 0 days
Sex: male
MYCN status: non-amplified
histology (INPC): stroma poor, poorly differentiated
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule total RNA
Extraction protocol RNA extraction: TRIzol reagent (Invitrogen)
SAGE library construction: I-SAGE kit (Invitrogen)
 
Description SAGE library of a primary stage 4S neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
TAGGTTGTCT 159 5646.11
GGGCTGGGGT 142 5042.43
GGATTTGGCC 135 4793.86
GTGAAACCCC 128 4545.29
GAGGGAGTTT 120 4261.21
CCACTGCACT 112 3977.13
TTGGTCCTCT 107 3799.58
AGCACCTCCA 100 3551.01
GCATAATAGG 100 3551.01
AAAAAAAAAA 99 3515.50
TACCATCAAT 99 3515.50
TGTGTTGAGA 99 3515.50
TTCATACACC 99 3515.50
CTGGGTTAAT 98 3479.99
ATTCTCCAGT 96 3408.97
TGCACGTTTT 90 3195.91
GGCAAGCCCC 84 2982.85
ATAATTCTTT 83 2947.34
TAATAAAGGT 79 2805.30
CCCATCGTCC 77 2734.28

Total number of rows: 13932

Table truncated, full table size 260 Kbytes.




Supplementary data files not provided

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