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Sample GSM112807 Query DataSets for GSM112807
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4S_NB1
Sample type SAGE
Anchor NlaIII
Tag Count 26451
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4S
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4S
Age at diagnosis: 239 days
Sex: male
MYCN status: non-amplified
histology (Shimada): stroma poor, undifferentiated
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule polyA RNA
Extraction protocol RNA extraction: TRIzol reagent (Invitrogen)
SAGE library construction: I-SAGE kit (Invitrogen)
 
Description SAGE library of a primary stage 4S neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
GCATAATAGG 139 5255.00
AATGCTTTGT 118 4461.08
TAATAAAGGT 93 3515.94
TGGGAAGTGG 91 3440.32
TGTGTTGAGA 85 3213.49
GTGAAACCCC 83 3137.88
ATTCTCCAGT 76 2873.24
GAAAAATGGT 73 2759.82
CACAAACGGT 70 2646.40
CCACTGCACT 70 2646.40
CCCATCGTCC 70 2646.40
CCTAGCTGGA 70 2646.40
CTTATGACAA 68 2570.79
GCCTTCCAAT 65 2457.37
GGATTTGGCC 64 2419.57
ATAATTCTTT 62 2343.96
TGTACCTGTA 62 2343.96
TTGGTCCTCT 62 2343.96
AAGACAGTGG 58 2192.73
CAATAAATGT 58 2192.73

Total number of rows: 13501

Table truncated, full table size 252 Kbytes.




Supplementary data files not provided

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