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Sample GSM112809 Query DataSets for GSM112809
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4S_NB5
Sample type SAGE
Anchor NlaIII
Tag Count 25097
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4S
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4S
Age at diagnosis: 3 days
Sex: male
MYCN status: non-amplified
histology (Shimada): stroma poor, undifferentiated
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule polyA RNA
Extraction protocol RNA extraction: TRIzol reagent (Invitrogen)
SAGE library construction: I-SAGE kit (Invitrogen)
 
Description SAGE library of a primary stage 4S neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
TGGGAAGTGG 291 11595.01
GCATAATAGG 143 5697.89
TAATAAAGGT 104 4143.92
AATGCTTTGT 93 3705.62
GTGAAACCCC 82 3267.32
TGTGTTGAGA 81 3227.48
ATAATTCTTT 77 3068.10
CACAAACGGT 65 2589.95
CCCATCGTCC 65 2589.95
CCACTGCACT 64 2550.11
CACCTAATTG 63 2510.26
GCAACTTAAC 63 2510.26
GCCTTCCAAT 63 2510.26
GTCTACTTTA 61 2430.57
CCTGTAATCC 60 2390.72
GAAAAATGGT 58 2311.03
CTAAGACTTC 57 2271.19
GTGCTGAATG 57 2271.19
AAGACAGTGG 55 2191.50
TGCACAGTTA 54 2151.65

Total number of rows: 11918

Table truncated, full table size 223 Kbytes.




Supplementary data files not provided

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