NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM112810 Query DataSets for GSM112810
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4_NB7
Sample type SAGE
Anchor NlaIII
Tag Count 19601
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4
Age at diagnosis: 933 days
Sex: male
MYCN status: non-amplified
histology (INPC): stroma poor, differentiating
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule polyA RNA
Extraction protocol RNA extraction: TRIzol reagent (Invitrogen)
SAGE library construction: I-SAGE kit (Invitrogen)
 
Description SAGE library of a primary stage 4 neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
GTTGTGGTTA 99 5050.76
TAATAAAGGT 81 4132.44
GCATAATAGG 77 3928.37
CACAAACGGT 71 3622.26
ATAATTCTTT 69 3520.23
GTGAAACCCC 64 3265.14
CTTATGACAA 54 2754.96
ATGTGAAGAG 51 2601.91
CATATCATTA 50 2550.89
TGTGTTGAGA 50 2550.89
CCCATCGTCC 48 2448.85
CCACTGCACT 47 2397.84
TTGGTGAAGG 46 2346.82
GCCTTCCAAT 45 2295.80
TAGGTTGTCT 44 2244.78
GAAATACAGT 43 2193.77
TTGGGGTTTC 40 2040.71
CCTGTAATCC 38 1938.68
CACCTAATTG 35 1785.62
GGATATGTGG 35 1785.62

Total number of rows: 10767

Table truncated, full table size 202 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap