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Sample GSM112812 Query DataSets for GSM112812
Status Public on Sep 06, 2006
Title Neuroblastoma_primary_stage4_NB9
Sample type SAGE
Anchor NlaIII
Tag Count 29407
Tag Length 10
 
Source name Neuroblastoma, primary tumor, stage 4
Organism Homo sapiens
Characteristics Tissue: primary neuroblastoma, bulk
Stage: 4
Age at diagnosis: 5465 days
Sex: female
MYCN status: non-amplified
histology (INPC): stroma poor, poorly differentiated
Biomaterial provider University Children's Hospital of Cologne
Treatment protocol None
Growth protocol None
Extracted molecule polyA RNA
Extraction protocol RNA extraction: TRIzol reagent (Invitrogen)
SAGE library construction: I-SAGE kit (Invitrogen)
 
Description SAGE library of a primary stage 4 neuroblastoma without preceding cytotoxic treatment
Data processing SAGE2000 software, version 4.12
 
Submission date Jun 06, 2006
Last update date Nov 19, 2008
Contact name Matthias Fischer
E-mail(s) matthias.fischer@uk-koeln.de
Phone 0492214786816
Fax 0492214784689
Organization name University Children's Hospital
Department Pediatric Oncology
Street address Kerpener Str. 62
City Cologne
ZIP/Postal code 50924
Country Germany
 
Platform ID GPL4
Series (1)
GSE4991 Gene expression of disseminated neuroblastoma

Data table header descriptions
TAG Tag sequence
COUNT Tag count
TPM tags per million

Data table
TAG COUNT TPM
TGGGAAGTGG 363 12344.00
TAATAAAGGT 322 10949.77
GCATAATAGG 189 6427.04
CCCATCGTCC 165 5610.91
TCAGATCTTT 158 5372.87
CACCTAATTG 153 5202.84
CACAAACGGT 149 5066.82
ATAATTCTTT 139 4726.77
TGTGTTGAGA 121 4114.67
CAATAAATGT 99 3366.55
CTTATGACAA 97 3298.53
AAGACAGTGG 93 3162.51
CCAGAACAGA 93 3162.51
ATTCTCCAGT 92 3128.51
GAGGGAGTTT 92 3128.51
TTCATACACC 92 3128.51
TTGGTCCTCT 92 3128.51
TGGTGTTGAG 83 2822.46
AGCACCTCCA 79 2686.44
TGTGCTAAAT 79 2686.44

Total number of rows: 12385

Table truncated, full table size 232 Kbytes.




Supplementary data files not provided

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