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Status |
Public on Oct 02, 2013 |
Title |
MII stage oocyte, wild type, biological rep 3 |
Sample type |
RNA |
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Source name |
polysome bound transcripts from mouse MII-stage oocytes, wild type
|
Organism |
Mus musculus |
Characteristics |
tissue: oocyte Stage: MII strain: C57BL/6J 129Sv background: wild type
|
Treatment protocol |
Forty-eight hours (h) after PMSG injection, mice were stimulated with hCG for 0, or 14 h, and GV and MII stage oocytes were collected.
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Extracted molecule |
total RNA |
Extraction protocol |
Polysome bound mRNAs were purified using Rneasy Plus Micro kit (Qiagen), and then reverse-transcribed and linearly amplified with WT-Ovation FFPE RNA Amplification System V2 (NuGEN).
|
Label |
biotin
|
Label protocol |
cDNA was fragment and labeled using NuGEN WT-Ovation FFPE System & Encore Biotin Module
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Hybridization protocol |
Hybridization was followed by GeneChip Expression Analysis Technical Manual 702232 Rev. 2
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Scan protocol |
GeneChips were scanned using the the Affymetrix GCS3000 microarray system
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Description |
Gene expression data from embryos in slow phase of cellularisation.
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Data processing |
Microarray data were normalized using the Robust Multi-array Average (RMA) method. RMA was performed using the affy library in Bioconductor and a custom chip definition file (CDF) representing the latest RefSeq probe mapping to the mouse genome (Mouse4302_Mm_REFSEQ, Version 16.0.0), downloaded from the Microarray Lab of the Molecular and Behavioral Neuroscience Institute, University of Michigan.
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Submission date |
May 03, 2013 |
Last update date |
Oct 02, 2013 |
Contact name |
Courtney Onodera |
E-mail(s) |
courtney.onodera@ucsf.edu
|
Organization name |
University of California, San Francisco
|
Street address |
1450 Third St, HD374
|
City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94158 |
Country |
USA |
|
|
Platform ID |
GPL17114 |
Series (1) |
GSE46640 |
Comparison of the translational program in oocytes from wild type and Areg KO mice |
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