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Sample GSM113472 Query DataSets for GSM113472
Status Public on Oct 01, 2009
Title 1:02 LPS inflammatory (Cy5)
Sample type RNA
 
Channel 1
Source name 1:02 LPS inflammatory
Organism Homo sapiens
Characteristics subject id = 1:02 (1:control, 2:atopy only, 3:asthma only, 4:atopy+asthma) | exposure = LPS | cell type = inflammatory | batch = 1 (2004) | included in published analysis = yes
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Stratagene Universal Human Reference RNA
Organism Homo sapiens
Characteristics Reference RNA
Extracted molecule total RNA
Label Cy3
 
 
Description human airway inflammatory cells
Data processing Processed with FeatureExtraction Version A.7.5.1 on Wednesday, July 21, 2004 14:21:30
 
Submission date Jun 08, 2006
Last update date Jul 31, 2009
Contact name John Tomfohr
E-mail(s) tomfohr@gmail.com
Phone 919-541-4274
Fax 919-541-7666
Organization name NIEHS
Street address 111 T.W. Alexander Dr. P.O. Box 12233
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1708
Series (1)
GSE5272 Human airway inflammatory cell response to LPS and house dust mite antigen

Data table header descriptions
ID_REF refers to the ID column in the platform table
VALUE log2 of normalized Cy5 signal over normalized Cy3 signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rMeanSignal raw Cy5 (red) signal intensity
gMeanSignal raw Cy3 (green) signal intensity
rIsWellAboveBG A boolean flag indicating whether the Cy5 (red) signal is 'WellAbove Background' (see FeatureExtraction manual)
gIsWellAboveBG A boolean flag indicating whether the Cy3 (green) signal is 'WellAbove Background' (see FeatureExtraction manual)

Data table
ID_REF VALUE rProcessedSignal gProcessedSignal rMeanSignal gMeanSignal rIsWellAboveBG gIsWellAboveBG
1 2.19983973471 1.231772e+004 2.681097e+003 4.920000e+002 1.647793e+003 1 1
2 0.0 1.412326e+002 4.560203e+001 3.004138e+002 3.207931e+002 0 0
3 0.510671629453 4.507607e+002 3.163869e+002 3.046207e+002 4.318276e+002 0 1
4 0.834962015482 7.031057e+002 3.941595e+002 3.093103e+002 4.683793e+002 0 1
5 -0.23559242179 5.465793e+002 6.435371e+002 3.060000e+002 5.696786e+002 0 1
6 0.0 2.147520e+002 1.132237e+002 3.005357e+002 3.466071e+002 0 1
7 -2.85604506954 3.083206e+002 2.232327e+003 2.990938e+002 1.212406e+003 0 1
8 0.0 2.160044e+002 1.203336e+002 3.005938e+002 3.498438e+002 0 1
9 0.392610801589 8.801165e+002 6.704286e+002 3.123077e+002 5.879615e+002 1 1
10 1.69090732595 3.357276e+003 1.039856e+003 3.570000e+002 7.643667e+002 1 1
11 1.86064567607 8.853865e+002 2.437938e+002 3.133929e+002 4.095357e+002 1 1
12 -0.13365451327 1.214959e+003 1.332894e+003 3.180000e+002 8.795313e+002 1 1
13 0.612700638331 2.355674e+002 1.540543e+002 3.010741e+002 3.646296e+002 0 1
14 -2.24154951008 4.891185e+002 2.313065e+003 3.044667e+002 1.283233e+003 0 1
15 2.40910549894 5.977565e+002 1.125411e+002 3.089310e+002 3.552759e+002 0 1
16 0.0 1.064410e+002 3.562004e+001 3.006552e+002 3.204483e+002 0 0
17 0.540316998448 8.064537e+002 5.545335e+002 3.111667e+002 5.396667e+002 1 1
18 0.389988311766 2.097297e+003 1.600522e+003 3.339000e+002 1.007633e+003 1 1
19 -0.922316847488 1.380037e+003 2.615386e+003 3.206333e+002 1.447667e+003 1 1
20 -0.787714830467 4.163719e+002 7.187986e+002 3.036429e+002 6.003929e+002 0 1

Total number of rows: 43931

Table truncated, full table size 3407 Kbytes.




Supplementary file Size Download File type/resource
GSM113472.txt.gz 10.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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