NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM113739 Query DataSets for GSM113739
Status Public on Oct 01, 2009
Title 4:15 HDM inflammatory (Cy3)
Sample type RNA
 
Channel 1
Source name Stratagene Universal Human Reference RNA
Organism Homo sapiens
Characteristics Reference RNA
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name 4:15 HDM inflammatory
Organism Homo sapiens
Characteristics subject id = 4:15 (1:control, 2:atopy only, 3:asthma only, 4:atopy+asthma) | exposure = HDM | cell type = inflammatory | batch = 2 (2005) | included in published analysis = yes
Extracted molecule total RNA
Label Cy3
 
 
Description human airway inflammatory cells
Data processing Processed with FeatureExtraction Version A.7.5.1 on Saturday, May 07, 2005 06:23:03
 
Submission date Jun 09, 2006
Last update date Jul 31, 2009
Contact name John Tomfohr
E-mail(s) tomfohr@gmail.com
Phone 919-541-4274
Fax 919-541-7666
Organization name NIEHS
Street address 111 T.W. Alexander Dr. P.O. Box 12233
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1708
Series (1)
GSE5272 Human airway inflammatory cell response to LPS and house dust mite antigen

Data table header descriptions
ID_REF refers to the ID column in the platform table
VALUE log2 of normalized Cy3 signal over normalized Cy5 signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rMeanSignal raw Cy5 (red) signal intensity
gMeanSignal raw Cy3 (green) signal intensity
rIsWellAboveBG A boolean flag indicating whether the Cy5 (red) signal is 'WellAbove Background' (see FeatureExtraction manual)
gIsWellAboveBG A boolean flag indicating whether the Cy3 (green) signal is 'WellAbove Background' (see FeatureExtraction manual)
INV_VALUE log2 of normalized Cy5 signal over normalized Cy3 signal

Data table
ID_REF VALUE rProcessedSignal gProcessedSignal rMeanSignal gMeanSignal rIsWellAboveBG gIsWellAboveBG INV_VALUE
1 0.680477 6.734812e+002 1.079368e+003 2.078667e+002 1.253667e+002 1 1 -0.680477100125
2 1.49885 5.222376e+001 1.475939e+002 5.525926e+001 9.951852e+001 0 1 -1.49885494568
3 1.2966 2.414221e+002 5.930534e+002 1.022414e+002 1.109655e+002 1 1 -1.29660417873
4 1.07069 2.683414e+002 5.636328e+002 1.079259e+002 1.096667e+002 1 1 -1.07068567134
5 0.248616 6.177184e+002 7.338907e+002 1.906296e+002 1.139259e+002 1 1 -0.248615900933
6 1.62495 9.925305e+001 3.061285e+002 7.058065e+001 1.019677e+002 1 1 -1.62495421136
7 0.335425 1.694521e+002 2.138061e+002 8.271429e+001 9.700000e+001 1 1 -0.335425309951
8 1.40835 5.497596e+001 1.459249e+002 6.155556e+001 9.588889e+001 0 1 -1.40835278745
9 0.882955 5.088282e+002 9.383552e+002 1.671667e+002 1.218333e+002 1 1 -0.882955438091
10 0.748531 4.428150e+002 7.439650e+002 1.496923e+002 1.154231e+002 1 1 -0.748530842925
11 1.8824 1.701411e+002 6.272904e+002 8.725000e+001 1.138571e+002 1 1 -1.8824013891
12 1.60626 1.663476e+003 5.064627e+003 4.594138e+002 2.604483e+002 1 1 -1.60625518209
13 1.17025 7.609063e+001 1.712428e+002 6.534615e+001 9.688462e+001 0 1 -1.17025211831
14 0.351016 1.721436e+002 2.195620e+002 8.350000e+001 9.773333e+001 1 1 -0.351015983198
15 1.85891 4.011306e+001 1.455034e+002 5.806897e+001 9.762069e+001 0 1 -1.85890924014
16 1.8787 3.852186e+001 1.416618e+002 5.834483e+001 9.731034e+001 0 1 -1.87870186575
17 1.24788 3.204824e+002 7.611218e+002 1.217600e+002 1.174000e+002 1 1 -1.24788233369
18 0.498909 9.640306e+002 1.362315e+003 2.815862e+002 1.354483e+002 1 1 -0.498909037183
19 0.060871 2.357645e+003 2.459248e+003 6.244444e+002 1.721852e+002 1 1 -0.0608709922066
20 -0.452096 7.881285e+002 5.761061e+002 2.285667e+002 1.090667e+002 1 1 0.452096367672

Total number of rows: 43931

Table truncated, full table size 3843 Kbytes.




Supplementary file Size Download File type/resource
GSM113739.txt.gz 10.5 Mb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap