NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM113741 Query DataSets for GSM113741
Status Public on Oct 01, 2009
Title 4:14 LPS inflammatory (Cy3)
Sample type RNA
 
Channel 1
Source name Stratagene Universal Human Reference RNA
Organism Homo sapiens
Characteristics Reference RNA
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name 4:14 LPS inflammatory
Organism Homo sapiens
Characteristics subject id = 4:14 (1:control, 2:atopy only, 3:asthma only, 4:atopy+asthma) | exposure = LPS | cell type = inflammatory | batch = 2 (2005) | included in published analysis = yes
Extracted molecule total RNA
Label Cy3
 
 
Description human airway inflammatory cells
Data processing Processed with FeatureExtraction Version A.7.5.1 on Wednesday, April 27, 2005 13:35:55
 
Submission date Jun 09, 2006
Last update date Jul 31, 2009
Contact name John Tomfohr
E-mail(s) tomfohr@gmail.com
Phone 919-541-4274
Fax 919-541-7666
Organization name NIEHS
Street address 111 T.W. Alexander Dr. P.O. Box 12233
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1708
Series (1)
GSE5272 Human airway inflammatory cell response to LPS and house dust mite antigen

Data table header descriptions
ID_REF refers to the ID column in the platform table
VALUE log2 of normalized Cy3 signal over normalized Cy5 signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rMeanSignal raw Cy5 (red) signal intensity
gMeanSignal raw Cy3 (green) signal intensity
rIsWellAboveBG A boolean flag indicating whether the Cy5 (red) signal is 'WellAbove Background' (see FeatureExtraction manual)
gIsWellAboveBG A boolean flag indicating whether the Cy3 (green) signal is 'WellAbove Background' (see FeatureExtraction manual)
INV_VALUE log2 of normalized Cy5 signal over normalized Cy3 signal

Data table
ID_REF VALUE rProcessedSignal gProcessedSignal rMeanSignal gMeanSignal rIsWellAboveBG gIsWellAboveBG INV_VALUE
1 0.0541285 1.367526e+003 1.419809e+003 3.270645e+002 1.439677e+002 1 1 -0.054128545742
2 -0 1.384105e+002 2.453811e+001 4.903333e+001 8.290000e+001 0 0 0.0
3 0.566888 3.976925e+002 5.891117e+002 1.271000e+002 1.058667e+002 1 1 -0.566887732313
4 0.559437 4.176234e+002 6.154492e+002 1.313333e+002 1.070370e+002 1 1 -0.55943730268
5 0.0323458 8.811533e+002 9.011322e+002 2.277857e+002 1.192857e+002 1 1 -0.0323457688777
6 0.957184 9.360174e+001 1.817293e+002 6.655172e+001 8.744828e+001 1 1 -0.957183851943
7 0.0261808 2.250397e+002 2.291608e+002 8.990323e+001 8.874194e+001 1 1 -0.0261807912983
8 1.20062 7.790883e+001 1.790639e+002 6.406897e+001 8.758621e+001 0 1 -1.20061596454
9 0.601264 7.237193e+002 1.097915e+003 1.967308e+002 1.288846e+002 1 1 -0.601264241129
10 0.61848 8.572411e+002 1.316085e+003 2.246429e+002 1.390357e+002 1 1 -0.618480072025
11 1.2823 2.672427e+002 6.500041e+002 1.020690e+002 1.096897e+002 1 1 -1.28229839969
12 1.35634 2.478212e+003 6.345063e+003 5.425714e+002 3.873214e+002 1 1 -1.35633526353
13 0.301077 1.404708e+002 1.730689e+002 7.446667e+001 8.623333e+001 1 1 -0.301076830799
14 -0.128558 2.297621e+002 2.101738e+002 9.067857e+001 8.760714e+001 1 1 0.128557963849
15 0.601231 8.825448e+001 1.338830e+002 6.546667e+001 8.456667e+001 0 1 -0.601230891629
16 1.07751 4.176864e+001 8.814806e+001 5.610714e+001 8.314286e+001 0 0 -1.07750844358
17 0.625971 5.603686e+002 8.647886e+002 1.623750e+002 1.182188e+002 1 1 -0.625971471661
18 -0.0830727 1.730415e+003 1.633589e+003 3.992759e+002 1.543793e+002 1 1 0.0830727336153
19 -0.442575 3.647630e+003 2.684000e+003 7.700714e+002 2.076786e+002 1 1 0.442574754407
20 -1.15976 1.102321e+003 4.933857e+002 2.688966e+002 9.944828e+001 1 1 1.15975731199

Total number of rows: 43931

Table truncated, full table size 3858 Kbytes.




Supplementary file Size Download File type/resource
GSM113741.txt.gz 10.5 Mb (ftp)(http) TXT
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap