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GEO accession:
Sample GSM113772
Query DataSets for GSM113772
Status
Public on Oct 01, 2009
Title
2:09 saline inflammatory (Cy3)
Sample type
RNA
Channel 1
Source name
Stratagene Universal Human Reference RNA
Organism
Homo sapiens
Characteristics
Reference RNA
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
2:09 saline inflammatory
Organism
Homo sapiens
Characteristics
subject id = 2:09 (1:control, 2:atopy only, 3:asthma only, 4:atopy+asthma) | exposure = saline | cell type = inflammatory | batch = 2 (2005) | included in published analysis = yes
Extracted molecule
total RNA
Label
Cy3
Description
human airway inflammatory cells
Data processing
Processed with FeatureExtraction Version A.7.5.1 on Friday, April 15, 2005 15:25:33
Submission date
Jun 09, 2006
Last update date
Jul 31, 2009
Contact name
John Tomfohr
E-mail(s)
tomfohr@gmail.com
Phone
919-541-4274
Fax
919-541-7666
Organization name
NIEHS
Street address
111 T.W. Alexander Dr. P.O. Box 12233
City
RTP
State/province
NC
ZIP/Postal code
27709
Country
USA
Platform ID
GPL1708
Series (1)
GSE5272
Human airway inflammatory cell response to LPS and house dust mite antigen
Data table header descriptions
ID_REF
refers to the ID column in the platform table
VALUE
log2 of normalized Cy3 signal over normalized Cy5 signal
rProcessedSignal
normalized and background subtracted Cy5 (red) signal
gProcessedSignal
normalized and background subtracted Cy3 (green) signal
rMeanSignal
raw Cy5 (red) signal intensity
gMeanSignal
raw Cy3 (green) signal intensity
rIsWellAboveBG
A boolean flag indicating whether the Cy5 (red) signal is 'WellAbove Background' (see FeatureExtraction manual)
gIsWellAboveBG
A boolean flag indicating whether the Cy3 (green) signal is 'WellAbove Background' (see FeatureExtraction manual)
INV_VALUE
log2 of normalized Cy5 signal over normalized Cy3 signal
Data table
ID_REF
VALUE
rProcessedSignal
gProcessedSignal
rMeanSignal
gMeanSignal
rIsWellAboveBG
gIsWellAboveBG
INV_VALUE
1
1.88669
3.979338e+001
1.471500e+002
5.103448e+001
7.120690e+001
0
1
-1.88668694509
2
0.448006
7.773244e+002
1.060390e+003
2.718667e+002
1.102000e+002
1
1
-0.448005611874
3
-0.660905
1.553507e+003
9.825642e+002
5.181613e+002
1.030645e+002
1
1
0.660905217971
4
0.0239101
2.517971e+002
2.560049e+002
9.760000e+001
7.164000e+001
1
1
-0.023910133464
5
-0.445604
1.558197e+004
1.144149e+004
6.429115e+003
5.001538e+002
1
1
0.445603565532
6
0.811334
1.076876e+002
1.889738e+002
6.531034e+001
6.937931e+001
1
1
-0.811333538577
7
-0.0967108
6.114937e+002
5.718461e+002
2.059643e+002
8.603571e+001
1
1
0.0967108461261
8
0.0507553
2.418945e+002
2.505560e+002
9.500000e+001
7.103448e+001
1
1
-0.0507553079762
9
-0.551725
3.871049e+002
2.640844e+002
1.300714e+002
7.025000e+001
1
1
0.551725354922
10
0.440847
7.818449e+002
1.061277e+003
2.730000e+002
1.094444e+002
1
1
-0.44084679471
11
-0.796824
2.887462e+002
1.662066e+002
1.018571e+002
6.435714e+001
1
1
0.796823943644
12
-0.686733
6.937177e+002
4.309785e+002
2.227931e+002
7.748276e+001
1
1
0.68673289864
13
0.371043
1.648212e+002
2.131612e+002
7.696552e+001
6.924138e+001
1
1
-0.371042942261
14
-0.412416
2.232039e+002
1.677075e+002
8.774074e+001
6.488889e+001
1
1
0.412415720321
15
-0.288208
2.491734e+002
2.040527e+002
9.477778e+001
6.714815e+001
1
1
0.288208048997
16
0.0624634
1.670854e+003
1.744785e+003
5.726875e+002
1.390625e+002
1
1
-0.0624633599005
17
1.06072
7.408992e+001
1.545497e+002
5.834483e+001
6.679310e+001
0
1
-1.06072131216
18
0.00229694
1.884608e+002
1.887611e+002
8.110714e+001
6.667857e+001
1
1
-0.0022969417472
19
5.16829
1.434359e+003
5.157852e+004
5.928333e+002
2.232533e+003
1
1
-5.16829223469
20
-0.655313
4.596537e+002
2.918514e+002
1.495667e+002
7.066667e+001
1
1
0.655313457268
Total number of rows:
43931
Table truncated, full table size
3851 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM113772.txt.gz
10.5 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
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