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Sample GSM113791

Query DataSets for GSM113791

Status

Public on Oct 01, 2009

Title

2:01 LPS inflammatory (Cy3)

Sample type

RNA

Channel 1

Source name

Stratagene Universal Human Reference RNA

Organism

Characteristics

Reference RNA

Extracted molecule

total RNA

Label

Cy5

Channel 2

Source name

2:01 LPS inflammatory

Organism

Characteristics

subject id = 2:01 (1:control, 2:atopy only, 3:asthma only, 4:atopy+asthma) | exposure = LPS | cell type = inflammatory | batch = 2 (2005) | included in published analysis = yes

Extracted molecule

total RNA

Label

Cy3

Description

human airway inflammatory cells

Data processing

Processed with FeatureExtraction Version A.7.5.1 on Thursday, April 14, 2005 11:00:14

Submission date

Jun 09, 2006

Last update date

Jul 31, 2009

Contact name

John Tomfohr

E-mail(s)

tomfohr@gmail.com

Phone

919-541-4274

Fax

919-541-7666

Organization name

NIEHS

Street address

111 T.W. Alexander Dr. P.O. Box 12233

City

RTP

State/province

NC

ZIP/Postal code

27709

Country

USA

Platform ID

Series (1)

Human airway inflammatory cell response to LPS and house dust mite antigen

Data table header descriptions
ID_REF	refers to the ID column in the platform table
VALUE	log2 of normalized Cy3 signal over normalized Cy5 signal
rProcessedSignal	normalized and background subtracted Cy5 (red) signal
gProcessedSignal	normalized and background subtracted Cy3 (green) signal
rMeanSignal	raw Cy5 (red) signal intensity
gMeanSignal	raw Cy3 (green) signal intensity
rIsWellAboveBG	A boolean flag indicating whether the Cy5 (red) signal is 'WellAbove Background' (see FeatureExtraction manual)
gIsWellAboveBG	A boolean flag indicating whether the Cy3 (green) signal is 'WellAbove Background' (see FeatureExtraction manual)
INV_VALUE	log2 of normalized Cy5 signal over normalized Cy3 signal

Data table
ID_REF	VALUE	rProcessedSignal	gProcessedSignal	rMeanSignal	gMeanSignal	rIsWellAboveBG	gIsWellAboveBG	INV_VALUE
1	0.843069	1.327822e+003	2.381930e+003	4.676129e+002	2.340968e+002	1	1	-0.84306891026
2	1.56514	1.096516e+002	3.244667e+002	8.837931e+001	1.410345e+002	1	1	-1.56514388827
3	1.77179	2.865875e+002	9.786333e+002	1.439355e+002	1.705806e+002	1	1	-1.7717924296
4	1.85302	2.695360e+002	9.737128e+002	1.386923e+002	1.705385e+002	1	1	-1.85301831324
5	0.508318	5.590720e+002	7.952191e+002	2.251071e+002	1.583571e+002	1	1	-0.508318308156
6	1.97671	9.790209e+001	3.853368e+002	8.600000e+001	1.445185e+002	1	1	-1.97670851799
7	0.847779	1.641462e+002	2.954187e+002	1.009333e+002	1.372000e+002	1	1	-0.847779495319
8	1.88198	6.597070e+001	2.431556e+002	7.769231e+001	1.365000e+002	1	1	-1.88198268399
9	0.755259	5.025504e+002	8.482722e+002	2.083704e+002	1.607407e+002	1	1	-0.755259048516
10	0.88438	6.721804e+002	1.240825e+003	2.647813e+002	1.783125e+002	1	1	-0.884379545011
11	1.90533	1.747540e+002	6.546192e+002	1.080385e+002	1.560769e+002	1	1	-1.90533032575
12	1.64932	1.934840e+003	6.069317e+003	6.548000e+002	4.105667e+002	1	1	-1.64931961151
13	0.619629	1.304741e+002	2.004709e+002	9.106452e+001	1.310323e+002	1	1	-0.619629437221
14	0.106253	1.368668e+002	1.473273e+002	9.125926e+001	1.273333e+002	1	1	-0.106253093481
15	2.07936	5.704839e+001	2.410978e+002	7.560000e+001	1.357000e+002	0	1	-2.07936054286
16	2.38419	2.981321e+001	1.556397e+002	6.963333e+001	1.311667e+002	0	1	-2.38418679081
17	0.63556	3.605850e+002	5.601834e+002	1.598621e+002	1.469310e+002	1	1	-0.635559782931
18	0.152947	1.072256e+003	1.192175e+003	3.876129e+002	1.738387e+002	1	1	-0.15294710515
19	-0.54726	3.339119e+003	2.285021e+003	1.070188e+003	2.273125e+002	1	1	0.547260017184
20	-0.952072	1.012368e+003	5.232829e+002	3.576129e+002	1.417742e+002	1	1	0.952071532499

Total number of rows: 43931

Table truncated, full table size 3840 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM113791.txt.gz	10.5 Mb	(ftp)(http)	TXT
Processed data included within Sample table

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