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|
| Status |
Public on Aug 24, 2007 |
| Title |
Normal primary thyroid cells, thyroid #4, control treatment |
| Sample type |
RNA |
| |
|
| Source name |
thyroid
|
| Organism |
Homo sapiens |
| Characteristics |
Normal primary thyroid cells, control (vehicle) treatment
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
|
| Label |
biotin
|
| Label protocol |
5 µg of total RNA was processed to produce biotinylated cRNA targets.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
Normal primary thyroid cells, thyroid #4, control treatment
|
| Data processing |
Ann Arbor quantile-normalized trimmed-mean method
|
| |
|
| Submission date |
Jun 12, 2006 |
| Last update date |
Aug 24, 2007 |
| Contact name |
Rork Kuick |
| E-mail(s) |
rork@umich.edu
|
| Phone |
734-936-9241
|
| Organization name |
University of Michigan
|
| Street address |
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109-2029 |
| Country |
USA |
| |
|
| Platform ID |
GPL571 |
| Series (1) |
| GSE5054 |
Effect of INF-gamma and IL1-beta on thyroid cells |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms |
| Data table |
| ID_REF |
VALUE |
| 201963_at |
3.462547729 |
| 207275_s_at |
3.10002573 |
| 202912_at |
2.737192643 |
| 205013_s_at |
2.365487985 |
| 206513_at |
2.298853076 |
| 205568_at |
1.819543936 |
| 205870_at |
2.08278537 |
| 202357_s_at |
2.31386722 |
| 207571_x_at |
2.238046103 |
| 210785_s_at |
2.413299764 |
| 221245_s_at |
2.997823081 |
| 220066_at |
1.991226076 |
| 205467_at |
2.315970345 |
| 209310_s_at |
2.120573931 |
| 1405_i_at |
1.991226076 |
| 204655_at |
2.136720567 |
| 208075_s_at |
2.130333768 |
| 214038_at |
1.977723605 |
| 205692_s_at |
2.195899652 |
| 204440_at |
2.418301291 |
Total number of rows: 22277
Table truncated, full table size 496 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM113938.CEL.gz |
3.4 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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