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Sample GSM1140526 Query DataSets for GSM1140526
Status Public on Feb 13, 2014
Title M0_GMCSF_12h [4950679013_I]
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics initial differentiation: GM-CSF
activation stimuli: con
time: 12h
donor: BC85-2
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Macrophage
Data processing The data were log2-transformed and normalized using quantile normalization with Partek Genomics Suite
 
Submission date May 14, 2013
Last update date Feb 13, 2014
Contact name Joachim Schultze
E-mail(s) j.schultze@uni-bonn.de
Organization name LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)
Department Genomics and Immunoregulation
Street address Carl-Troll-Strasse 31
City Bonn
State/province NRW
ZIP/Postal code 53115
Country Germany
 
Platform ID GPL6947
Series (2)
GSE46903 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation [Expression]
GSE47189 Transcriptome-based network analysis reveals a spectrum model of human macrophage activation

Data table header descriptions
ID_REF
VALUE log2-transformed,quantile normalized
4950679013_I.Detection Pval

Data table
ID_REF VALUE 4950679013_I.Detection Pval
ILMN_1762337 6.09623 0.961792
ILMN_2055271 6.49051 0.126482
ILMN_1736007 6.33502 0.55336
ILMN_2383229 6.33654 0.550725
ILMN_1806310 6.46172 0.175231
ILMN_1779670 6.45444 0.188406
ILMN_1653355 6.50654 0.106719
ILMN_1717783 6.38248 0.378129
ILMN_1705025 6.21198 0.8722
ILMN_1814316 6.33013 0.566535
ILMN_2359168 6.11327 0.953887
ILMN_1731507 6.34864 0.508564
ILMN_1787689 6.54139 0.083004
ILMN_1745607 8.73595 0
ILMN_2136495 6.12347 0.952569
ILMN_1668111 6.13205 0.948617
ILMN_2295559 6.27707 0.714097
ILMN_1735045 6.32655 0.57971
ILMN_1680754 6.53916 0.0843215
ILMN_2375184 6.23847 0.824769

Total number of rows: 47463

Table truncated, full table size 1331 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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